Oligo and EST Anatomy Viewer
The Oligo and EST Anatomy Viewer (OEAV) is a tool we have developed at TIGR to visualize transcriptome data for rice. This tool provides quantitative data on rice transcript frequency based on ESTs (digital or electronic Northern) and microarray data (in development). This is modeled after the NCI SAGE Genie. The purpose of this tool is to provide array users with a quick reference for comparison of array expression data with digital northern data as determined through EST frequency. However, users should be cautious about the data as there are limitations on its use. For example, some of the EST libraries were normalized or sequenced in a small number, thus, the data generated for these libraries may not be robust. The data in OEAV can be searched based on keyword, oligo ID, accession number, rice model, or gene ontology. The gene ontology (GO) assignments are provided at the deeper level as shown on the GO site and with plant GO Slim identifiers that provide a higher view of the ontologies. Please visit the gene ontology web site to read more on the GO identifiers.
The Oligo and EST Anatomy Viewer is only available for the oligos that are mapped to a TIGR rice model.
Last modified: Wednesday, 23-Aug-2006 14:01:20 EDT