Rice Oligonucleotide Array Database

Search Rice Oligonucleotide Array Database Experiments

Number of experiments in database: 105
Number of samples in database: 1867

Click on a experiment's Title to view more information about the experiment. Click on a column header to sort results by that column.

	ID	Platform	Title	Contributor	Samples
1.	GSE4438	Affymetrix	Expression data from rice under salinity stress	Close T,Walia H	24
2.	GSE4471	Affymetrix	Rice varieties Azucena and Bala grown in 0 and 1ppm arsenate	Norton G,Nigar M,Williams P,Dasgupta T,Meharg A,Price AH	12
3.	GSE5167	Affymetrix	Rice seedling hormone treatment	Jain M,Tyagi AK,Khurana JP	6
4.	GSE6737	Affymetrix	Cytokinin treatment and OsRR6-overexpression		28
5.	GSE6893	Affymetrix	Expression data for reproductive development in rice	Kapoor S,Tyagi AK,Khurana JP,Arora R,Agarwal P,Nijhawan A,Sharma P,Jain M	45
6.	GSE6901	Affymetrix	Expression data for stress treatment in rice seedlings	Tyagi AK,Kapoor S,Khurana JP,Ray S	12
7.	GSE6908	Affymetrix	Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile	Lasanthi-Kudahettige R,Magneschi L,Loreti E,Gonzali S,Licausi F,Novi G,Alpi A,Perata P	4
8.	GSE7197	Affymetrix	Rice OsSRT1 RNAi transgenic line	Huang L,Sun Q,Qin F,Li C,Zhao Y,Zhou D	6
9.	GSE7256	Affymetrix	Virulent infection by Magnaporthe grisea	Balzergue S,Morel J,Martin-Magniette ML	8
10.	GSE7951	Affymetrix	Genome-wide gene expression profiling of rice stigma	Li M,Xu W,Yang W,Kong Z,Xue Y	13
11.	GSE8380	Affymetrix	Expression Profiling of Plants Overexpressing OsWRKY13	Qiu D,Xiao J,Xie W,Liu H,Li X,Xiong L,Wang S	9
12.	GSE9498	Affymetrix	Wild type Zhonghua11 and mutant gif1 in filling stage	Li Q,Wang E,He Z	6
13.	GSE10054	Affymetrix	Splicing factor OsSKIPa knock-down and overexpressed rice	Hou X,Xie K,Yao J,Qi Z,Xiong L	6
14.	GSE10373	Affymetrix	Rice susceptible and resistant cultivars with the parasitic plant Striga hermonthica	Scholes JD,Swarbrick PJ,Huang K,Slate J,Press MC	24
15.	GSE10857	Affymetrix	Rice root tips before, at and buckled by a hard layer in two rice varieties	Norton GJ,Price AH	12
16.	GSE10872	Affymetrix	Analysis of RILs of SA0420 rice mutant line	Su H,Leu W,Tsai C,Li W,Tseng Y,Tseng T,Wang C	2
17.	GSE11025	Affymetrix	Two contrasting rice genotypes in response to rice stripe virus infection	Zhang X,Wu Z,Xie L,Lin Q,Xie L	12
18.	GSE11175	Affymetrix	Comparison of transcriptome profile between wild-type and dst mutant plants	Lin H,Huang X,Chao D	6
19.	GSE11966	Affymetrix	Expression data from rice embryo,endosperm,root,leaf and seedling	Xue H,Xue L,Zhang J	10
20.	GSE12069	Affymetrix	Comparison of transgenic and mutant rice lines	Batista R,Saibo N,Lourenco T,Oliveira MM	14
21.	GSE12097	Affymetrix	antiOsLIC collar chip	Wang L,Yan H,Chong K	2
22.	GSE14275	Affymetrix	Expression data for heat shock in rice seedlings	Hu W,Hu G,Han B	6
23.	GSE14403	Affymetrix	Contrasting rice genotypes in response to salinity stress	Cotsaftis O,Plett D,Johnson AA,Close TJ,Tester M,Baumann U,Walia H,Wilson C	23
24.	GSE15046	Affymetrix	Transcriptome analysis of gibberellin-signaling mutants in rice	Sakakibara H,Kamada-Nobusada T,Ueguchi-Tanaka M,Matsuoka M	12
25.	GSE15071	Affymetrix	Detection of genomic deletions in rice deletion mutants	Bruce M,Leach J,Mauleon R	17
26.	GSE15448	Affymetrix	codA-expressing transgenic indica rice	Giri J,Tyagi AK	9
27.	GSE16265	Affymetrix	Nipponbare and 9311 young panicle 2cm	Horiuchi Y,Harushima Y,Kurata N	10
28.	GSE16793	Affymetrix	Rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola	Nino-Liu DO	60
29.	GSE17194	Affymetrix	Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle	Xu W,Wang K,Xue Y,Cheng Z	4
30.	GSE17245	Affymetrix	Transcriptome analysis of iron and phosphorus interaction in rice seedlings	Zheng L,Huang F,Narsai R,Wu J,Giraud E,He F,Cheng L,Wang F,Wu P,Whelan J,Shou H	16
31.	GSE18361	Affymetrix	Rice root infected with Magnaporthe oryzae strain Guy11	Marcel S,Sawers R,Oakeley E,Angliker H,Paszkowski U	12
32.	E-MEXP-1766	Affymetrix	The first 24 hours of germination in rice grown under aerobic conditions		15
33.	E-MEXP-2267	Affymetrix	Rice germination under anaerobic conditions, aerobic to anaerobic switch and reverse		36
34.	OS4	Affymetrix	Rice cultivars IRBB7, IRBB5 and IR24 undergoing infection by X. oryzae pv. oryzae		45
35.	GSE8216	Affymetrix	Cellulase induced hypersensitive reaction like response in rice	Jha G,Patel HK,Ramesh P,Sonti RV	6
36.	GSE14647	Affymetrix	Leaf blades of the rice Os-LBD37 overexpressor line RK16331-13		6
37.	GSE17169	Affymetrix	bulked RILs with high and low grain number per panicle	Deshmukh RK,Singh A,Jain N,Gacche RN,Singh AK,gaikwad K,Sharma TR,Mohapatra T,Singh NK	4
38.	GSE19024	Affymetrix	Dissecting the developmental transcriptomes of rice	Wang L,Xie W,Chen Y,Tang W,Yang J,Ye R,Liu L,Xu C,Lin Y,Xiao J,Zhang Q	190
39.	GSE19239	Affymetrix	Transgenic rice line carrying the maize resistance gene Rxo1 to Xoc	Zhou Y,Xu M,Zhao M,Xie X,Zhu L,Fu B,Li Z	12
40.	E-MEXP-2506	Affymetrix	Rice plants grown in different light and temperature cycles		78
41.	GSE18930	Affymetrix	Aerial tissue of submergence tolerant M202(Sub1) and intolerant M202	Fukao T,Bailey-Serres J	8
42.	GSE15912	Affymetrix	Pusa 1266 and Pusa Basmati 1 in panicle primordia stage	Deshmukh RK,Singh A,Jain N,Singh AK,Gaikwad K,Sharma TR,Mohapatra T,Singh NK	4
43.	GSE16108	Affymetrix	Parental lines and bulked salt sensitive and salt tolerant RILs	Pandit A,Bal S,Guatum RK,Rai V,Singh R,Sharma PC,Singh AK,Gaikwad K,Sharma TR,Mohapatra T,Singh NK	16
44.	GSE16341	Affymetrix	Single feature polymorphism detection by Affymetrix expression array	Horiuchi Y,Harushima Y,Kurata N	27
45.	GSE20522	Affymetrix	Gui-630 (Indica) X Taiwanjing (Japonica) and mutant lemmata (lem) panicle	Xu W,Xing Z,Duan Y,Xue Y,Wu W	6
46.	E-MEXP-2311	Affymetrix	Transcription profiling of rice dwarf mutant Fukei71		9
47.	GSE13988	Affymetrix	Rice expression atlas (1): Anther development	Fujita M,Horiuchi Y,Ueda Y,Mizuta Y,Kubo T,Yano K,Yamaki S,Tsuda K,Niihama M,Kato H,Kikuchi S,Mochizuki T,Tsutsumi N,Kurata N	26
48.	GSE14298	Affymetrix	Rice expression atlas (2): Pollination - Fertilization	Fujita M,Horiuchi Y,Ueda Y,Mizuta Y,Kubo T,Yano K,Yamaki S,Tsuda K,Niihama M,Kato H,Kikuchi S,Mochizuki T,Tsutsumi N,Kurata N	20
49.	GSE14299	Affymetrix	Rice expression atlas (3): Early embryogenesis	Fujita M,Horiuchi Y,Ueda Y,Mizuta Y,Kubo T,Yano K,Yamaki S,Tsuda K,Niihama M,Kato H,Kikuchi S,Mochizuki T,Tsutsumi N,Kurata N	27
50.	GSE14300	Affymetrix	Rice expression atlas (4): Vegetative tissues	Fujita M,Horiuchi Y,Ueda Y,Mizuta Y,Kubo T,Yano K,Yamaki S,Tsuda K,Niihama M,Kato H,Kikuchi S,Mochizuki T,Tsutsumi N,Kurata N	25
51.	GSE14692	Affymetrix	Temporal regulatory role of miR156 during leaf ontogenesis	Xie K,Hou X,Xiong L	12
52.	GSE19844	Affymetrix	Transcriptomics-based identification of Xoo strain BAI3 Talc targets in rice	Saez-Vasquez J,Balzergue S,Szurek B,Martin-Magniette ML	9
53.	GSE22788	Affymetrix	Rice leaf transcriptome from 6 week old plants	Walia H,Ronald P	3
54.	GSE24048	Affymetrix	Expression data from field droughted rice plants	Price AH,Jones HG,Norton GJ,Huang S,Xiong L	12
55.	GSE24228	Affymetrix	Identification of Rhizome-Specific Genes in Oryza longistaminata	Hu F,Wang D,Zhao X,Zhang T,Sun H,Zhu L,Zhang F,Li L,Li Q,Tao D,Fu B,Li Z	15
56.	GSE25073	Affymetrix	Expression data from rice seedlings of wild type and the CHR729 mutant	Hu YF,Liu DN,Zhou DX	6
57.	GSE25206	Affymetrix	Transcriptomic shifts in rice roots in response to Cr (VI) stress	Dubey S,Misra P,Dwivedi S,Chatterjee S,Bag SK,Mantri S,Asif MH,Rai A,Kumar S,Shri M,Tripathi P,Tripathi RD,Trivedi PK,Chakrabarty D,Tuli R	14
58.	GSE25693	Affymetrix	polaris (pola) mutant lines and its POLARIS (POLA) wild-type at meiotic and ripening stages	Dong Sun L,Li Juan C,Cheng Yun L,Yong Sheng L,Xue Lin T,Bao-Rong L,Juan L,Shu Xian G,Sang Gu K,Hak Soo S,You Yong Z	4
59.	GSE26280	Affymetrix	Genome-wide temporal-spatial gene expression profiling of drought responsiveness in rice	Wang D,Pan Y,Zhao X,Zhu L,Zhang L,Fu B,Li Z	36
60.	GSE26387	Affymetrix	Methanol is an endogenous elicitor molecule upon senescence of detached rice leaves	Kang K,Park S,Natsagdorj U,Kim YS,Back K	3
61.	E-MEXP-2401	Affymetrix	Nagina-22 (N22) and IR64 under normal and drougth conditions		12
62.	E-MTAB-275	Affymetrix	Rice plants grown in differnent light and temperature conditions		39
63.	GSE4645	Agilent22K	The function of CEBiP in the chitin elicitor signaling in rice cells	Kaku H,Yoko N,Ishii-Minami N,Akimoto-Tomiyama C,Minami E,Shibuya N	4
64.	GSE5906	Agilent22K	Bacterial lipopolysaccharides induce defense responses		4
65.	GSE6124	Agilent22K	Virus-susceptible and -resistant rice lines (TW16-4 and -69)	Satoh K,DeLeon T,Kwak D	6
66.	GSE6125	Agilent22K	Virus-susceptible and -resistant rice lines (TW16-1263 and -1029)	Satoh K,DeLeon T,Kwak D	6
67.	GSE6126	Agilent22K	Virus-susceptible and -resistant rice lines (NIL37 and NIL22)	Satoh K,Kwak D,Lee B	4
68.	GSE6244	Agilent22K	Indica rice cultivar IET8585 (Ajaya) infected with Xoo	Kottapalli K,Rakwal R,Satoh K,Kikuchi S	6
69.	GSE6362	Agilent22K	Indica rice cultivar FR13A under submergence treatment	Kottapalli KR,Satoh K,Rakwal R,Shibato J,Doi K,Nagata T,Kikuchi S	6
70.	GSE6600	Agilent22K	Indica rice cultivar FR13A under salt stress condition	Kottapalli KR,Kikuchi S	6
71.	GSE8518	Agilent22K	Biotrophic Invasion by Magnaporthe oryzae	Mosquera G,Coughlan S,Valent B	12
72.	GSE8811	Agilent22K	Rice plants infested with planthoppers	Satoh M,Gomi K,Ohashi Y,Takabayashi J	6
73.	GSE9765	Agilent22K	Rice plants irradiated with carbon ion beams (HIMAC)	Rakwal R,Shibato J,Nojima K,Kim Y,Nahm B,Jwa N,Endo S,Tanaka K,Iwahashi H	2
74.	GSE10098	Agilent22K	Identification of downstream genes regulated by RFL	Rao NN,Prasad K,Ravikumar P,Vijayraghavan U	4
75.	GSE11157	Agilent22K	Rice plants fumigated with ozone	Rakwal R	12
76.	GSE11158	Agilent22K	Rice plants exposed to jasmonic acid (JA)	Rakwal R	2
77.	GSE14606	Agilent22K	Rice infected with rice tungro spherical virus (RTSV)	Satoh K,Kondoh H,Kimura S,De Leon T,Kikuchi S	4
78.	E-MEXP-1065	Agilent22K	Overexpress OsNAC6 under normal growth condition		4
79.	E-MEXP-1066	Agilent22K	Overexpress OsNAC6-GR after the DEX treatment		4
80.	GSE6187	Agilent22K	Nipponbare and 6-4 under two conditions	Tanaka J,Maruyama K,Satoh K	6
81.	GSE15122	Agilent22K	Cytosolic glutamine synthetase 1;1 knock-out mutant rice	Tabuchi M,Yamaya T	6
82.	GSE11451	Agilent44K	OsGLK1 regulated genes in rice	Nakamura H,Hakata M,Muramatsu M,Nagamura Y,Hirochika H,Ichikawa H	4
83.	GSE15021	Agilent44K	Microarray analysis of strain EG4 vs. Nipponbare	Naito K,Zhang F,Tsukiyama T,Saito H,Okumoto Y,Tanisaka T	2
84.	GSE15479	Agilent44K	Rice plants treated with D-allose	Yamasaki-Kokudo Y,Satoh M,Gomi K,Kano A,Akimitsu K	6
85.	GSE15613	Agilent44K	OsMKK4 regulated genes	Kishi-Kaboshi M,Takahashi A,Hirochika H	26
86.	GSE16800	Agilent44K	The function of OsCERK1 in the chitin elicitor signaling in Rice	Kaku H,Desaki Y,Nakano T	4
87.	GSE17098	Agilent44K	Tricellular pollen and pollen mother cells (11447)	Tang W,Tang X	4
88.	GSE17791	Agilent44K	Expression profiling of a lesion mimic genotype, splNF4050-8	Babu R,Kottapalli K	2
89.	GSE19595	Agilent44K	Rice plants treated with D-psicose	Yamasaki-Kokudo Y,Fukumoto T,Ohtani K,Kano A,Tada Y,Gomi K,Akimitsu K	3
90.	GSE20345	Agilent44K	Rice developing caryopsis exposed to high temperature	Yamakawa H,Hakata M	6
91.	GSE20746	Agilent44K	Salinity stress inducible genes in rice	Mizuno H,Matsumoto T	4
92.	GSE27884	Agilent44K	Transcriptional profiling of rice salt sensitive 1 (rss1) mutant	Ogawa D,Hobo T,Toda Y,Hattori T,Takeda S	12
93.	GSE28428	Agilent44K	Rice plants (Oryza sativa var. japonica): WT vs. MIT knockdown plant	Ishimaru Y	4
94.	GSE6533	BGIYale	Drought and High-salinity Stresses-responsive Genes	Zhou J,Wang X,Deng X	63
95.	GSE6552	BGIYale	Transcriptome associates with rice organogenesis	Su N,He K,Jiao Y,Deng X	8
96.	GSE11712	BGIYale	Gene expression level of six rice lineages		12
97.	GSE13161	BGIYale	A transcriptome atlas of rice cell types	Jiao Y,Tausta L,Gandotra N,Sun N,Clay NK,Liu T,Ceserani T,Chen M,Ma L,Holford M,Zhao H,Deng X,Nelson T	168
98.	GSE14729	BGIYale	Super-hybrid rice LYP9 and its parental lines	Gang W,Yong T,Guozhen L,Chen C,Renyuan L,Hongai X,Qiang G,Haipan Z,Zhike L,Yuning H,Xiaobing L,Guisheng S,Hongli Z,Yonggang P,Dayong L,Honglin X,Xiaoli W,Mengliang C,Huafeng D,Longping Y,Jun Y,Zhen Z,Lihuang Z	48
99.	GSE16116	BGIYale	Xa21-mediated Defense Responses in Rice	Gan Q,Bai H,Zhao X,Tao Y,Zeng H,Han Y,Zhu L,Song W,Liu G	23
100.	GSE9653	NSF20K	Dissect Rice Defense Response Pathways	Wang G,Ronald P,Leach J,Jung KH,Park CH	114
101.	E-MEXP-1773	NSF20K	Rice plants overexpressing OsGH3.1		6
102.	GSE8261	NSF45K	A Functional Survey of Light-Responsive Genes	Jung KH	8
103.	GSE11896	NSF45K	Global Transcriptome Profiles in the Nodes of Rice	Schnable PS	67
104.	GSE16796	NSF45K	Analysis of PHOTOPERIOD SENSITIVITY5 in Rice	Andres F,Galbraith DW,Talon M,Domingo C	4
105.	GSE17704	NSF45K	The Submergence Tolerance Regulator Sub1A	Ronald P,Bailey-Serres J,Jung K,Fukao T,Walia H,Cao P,Seo Y	10