Rice Oligo Array Database

Rice GO Enrichment Analysis

Gene Ontologies (GO) provide controlled vocabulary to describe the biological process, molecular function, and component of the cell to which a gene product putatively contributes. GO are useful for identifying biological patterns in a list of genes in a genome, microarray data set, or cDNA collection.

GO Statistics

	Gramene GO
No. of GO Terms	2,215
No. of Biological Process GO Terms	824
No. of Cellular Component Process GO Terms	262
No. of Molecular Funtion GO Terms	1,129
No. of Genes with GO	29,610

GO Enrichment

Hypergeometric distribution was used to get the p value of GO enrichment analysis.

Rice KO Enrichment Analysis

KEGG Orthology (KO) is the basis for the representation of KEGG reference pathway maps and BRITE functional hierarchies. It consists of manually defined ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes.

KO Statistics

	KEGG KO
No. of KO Terms	2,024
No. of Genes with KO	3,314

KO Enrichment

Hypergeometric distribution was used to get the p value of KO enrichment analysis.

Last modified: Friday, 15-Apr-2011 10:24:50 Pacific Daylight Time